PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_22971_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 117aa    MW: 12893.9 Da    PI: 10.1725
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_22971_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000225072123
                                         EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                         ++C+ C+k F++   L  H  +H
  cra_locus_22971_iso_1_len_370_ver_3 50 FSCKTCNKKFPTFQALGGHRASH 72
                                         89**********99999998887 PP

2zf-C2H211.40.00196117122
                                          EEETTTTEEESSHHHHHHHHHH CS
                              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                                          ++C++Cg  Fs    L  H+r+
  cra_locus_22971_iso_1_len_370_ver_3  96 HQCSICGLKFSLGQALGGHMRR 117
                                          79**********9999999996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.45E-848116No hitNo description
PfamPF139121.4E-114974IPR007087Zinc finger, C2H2
PROSITE profilePS501579.5155077IPR007087Zinc finger, C2H2
SMARTSM003550.135072IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
PfamPF139128.3E-795116IPR007087Zinc finger, C2H2
SMARTSM003555696116IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MTVLKRSRED HDREAIESLA MANCLMLLST VGKTTNNSSP LIGSDNDRVF SCKTCNKKFP  60
TFQALGGHRA SHKKIKLLNS DLIIHNSADD VKPKTHQCSI CGLKFSLGQA LGGHMRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002284384.19e-41PREDICTED: zinc finger protein ZAT11
SwissprotQ424101e-29ZAT12_ARATH; Zinc finger protein ZAT12
TrEMBLB2CZY84e-44B2CZY8_CAMSI; Putative cold-inducible protein
STRINGVIT_06s0004g04180.t013e-40(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150